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A guide to microbial sequencing with Oxford Nanopore
- 16S
- AMR
- Assembly
- Bacteria
- Conservation
- DNA
- Environment
- Fungi
- GridION
- High-throughput
- Identification
- Infectious disease
- Long-read
- Metagenomics
- Microbiology
- Microbiome
- Plasmid
- Whole genome
April 17 2024
Brochure: microbiology and infectious disease research
- 16S
- AMR
- Assembly
- Bacteria
- DNA
- EPI2ME
- Environment
- Food safety
- Fungi
- High-throughput
- Infectious disease
- Metagenomics
- Microbiology
- Microbiome
- Monitoring
- Outbreak
- Plasmid
- Portable
- Real-time
- Virus
April 16 2024
Evaluation of NGS DNA barcoding for biosecurity diagnostic applications: case study from banana freckle incursion in Australia
- Microbiology
- Fungi
- MinION
- Real-time
- Portable
April 15 2024
Single-molecule epitranscriptomic analysis of full-length HIV-1 RNAs reveals functional roles of site-specific m6As
- Microbiology
- Virus
- Transcriptomics
- RNA
- MinION
April 11 2024
Whole genome assembly of a hybrid Trypanosoma cruzi strain assembled with nanopore sequencing alone
- Microbiology
- Assembly
- Whole genome
- MinION
April 9 2024
Improving bacterial metagenomic research through long-read sequencing
- Bacteria
- Long-read
- Metagenomics
- Microbiology
- MinION
- Plasmid
- Assembly
April 4 2024
Using nanopore sequencing to identify bacterial infection in joint replacements: a preliminary study
- AMR
- Microbiology
- MinION
- Bacteria
- Clinical research
- Real-time
- Bioinformatics
March 30 2024
Workflow: Bacterial isolate sequencing
- Bacteria
- Whole genome
- DNA
- Microbiology
- Infectious disease
- Clinical research
- Identification
- Environment
March 28 2024
Species-level profiling of environmental microbiota with high-accuracy full-length nanopore 16S sequencing
- 16S
- Microbiology
- DNA
- Bacteria
- PromethION
- Targeted
- Infectious disease
- Microbiome
- Food safety
March 8 2024
Development and proof-of-concept demonstration of a clinical metagenomics method for the rapid detection of bloodstream infection
- MinION
- Clinical research
- Metagenomics
- Infectious disease
- Microbiology
March 5 2024
Strain-level characterisation of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with
- Metagenomics
- Targeted
- Microbiology
- Infectious disease
- DNA
- GridION
March 1 2024
A gold standard dataset for lineage abundance estimation from wastewater
- Virus
- Infectious disease
- Microbiology
February 17 2024
Using a mobile nanopore sequencing lab for end-to-end genomic surveillance of *Plasmodium falciparum*: a feasibility study
- Portable
- Microbiology
- Monitoring
February 1 2024
The usefulness of Nanopore Sequencing in Whole-Genome Sequencing-Based Genotyping of Listeria monocytogenes and Salmonella enterica serovar Enteritidi
- Whole genome
- DNA
- MinION
- Microbiology
- Bacteria
January 30 2024
An Oxford Nanopore Technology-based hepatitis B virus sequencing protocol suitable for genomic surveillance within clinical diagnostic settings
- Microbiology
- Infectious disease
- Clinical research
- Whole genome
January 25 2024
NASCarD (nanopore adaptive sampling with carrier DNA): a rapid, PCR-free method for SARS-CoV-2 whole-genome sequencing in clinical samples
- Microbiology
- Infectious disease
- Clinical research
January 9 2024
mEnrich-seq: Methylation-guided enrichment sequencing of bacterial taxa of interest from microbiome
- Targeted
- Methylation
- Microbiology
January 4 2024
Application of host-depleted nanopore metagenomic sequencing in the clinical detection of pathogens in pigs and cats
- Metagenomics
- Animal
- Microbiology
- MinION
December 13 2023